Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015906752.1_cds_XP_016456934.1_50717
CDS Infomation

[gene=LOC107780846] [db_xref=GeneID:107780846] [protein=cysteine--tRNA ligase 2, cytoplasmic-like] [protein_id=XP_016456934.1] [location=join(126213..126385,127973..128036,128229..128390,129147..129317,129389..129670,129749..129874,130291..130515,130602..130718,131074..131424)] [gbkey=CDS]
Sequence

ATGGTGAACGAGAAGATTGAATTTCAGGTCTATAACACAATGACGAAACAAAAGGAGGTT
TTCATACCGAAGGAACCAGGTAAGGTGAAATTGTACGTTTGCGGCGTTACCAGTTATGAT
TTCAGTCATATCGGCCATGCTCGAGCTTATGTCGCCTTTGACGTCCTCTACAGATATCTG
AAATACTTGGGATACGATGTTGTGTATGTGCGCAATTTCACCGATGTAGATGACAAGATA
ATTAAGCGCGCTAATGAGACTGGAGAAGACCCAATTGCTTTGAGTGGTCGATTCTGCCAA
GAATTTCTAAAAGACATGGATGATCTCCAGTGCCTCCTACCGACTCATCAGCCTCGTGTT
ACTGACCATATGGAGCAGATCAAGGAAATGATAGCTAAGATAATAACCAATGGCTGTGCA
TACACAATTGATGGAGATGTTTATTTCTCTGTCGATAGTTTTCCAGAGTATGGTCGATTA
TCTGGACGAAAATTAGAAGATAATCGAGCCGGAGAACGCGTTGCAGTTGATTCAAGAAAG
CGAAATGCTGCTGACTTTGCCTTGTGGAAGGCTGCAAAGCCTGGTGAACCAAGTTGGGAG
AGCCCCTGGGGTCCTGGAAGACCAGGTTGGCATATAGAATGCAGTGCAATGAGTGCGCAA
TATCTGACACATTCCTTCGATATACATGGTGGCGGAATGGACTTGACTTTTCCTCACCAT
GAAAATGAGATCGCACAGAGTTGCGCTGCTTGCCGGGAGAGTAACATTAGCTACTGGATG
CATAATGGTTTTGTAACCATAGACGATGAGAAAATGTCGAAATCTTTGGGGAACTTCTTC
ACTATACGTGAGGTAACTCGATTGTATCATCCCATTGCATTGAGGTACTTCTTGTTGGGG
ATGCACTACCGGTCTCCTGTTAATTACTCAATATCACAGATAGAAATTGCTTCAGAATCT
GTGTTCTACCTTTATCAGACCTTACATGATTGTGAAGAAGCCTTGTCAGTATTCCAACAA
GGAACTGAAACTGAAACTGAAGTAAGGGGGGTGCGTGTTAGCCCTCAGGCCCAAGAATGC
ATAAAGAAGCTGCGTAATGAGTTGGAGACAAAACTTTCTGATGATTTGCATACACCTACT
ATCTTAAATGCTGCTCTTCAGGAAGCCCTTAGACTTATGAATAGTTCTTTGAACATGCTG
AAGAAAAAGCAGCAAAAGAAACAACAATTATCTGCTGTTTTGTCCCTAGCTGAGCTCCTG
AAAGAAGTGAAGGCAGTGTTGGATGTCCTTGGATTGCTCTCTAGTTCAACTTGCGCTGAG
GTTTTGCAGCAGTTTAAAGAGAGAGCATTGAAAAGAGCTGAACTGACGGAGGAAGATATT
TTGCATGCAATTGAGGAAAGAACACTAGCGAGGAAAAACAAGGAGTTTGCAAGAAGTGAT
CAGATTAGAAGTGATTTAGTGGCCAAGGGAATTGCTTTAATGGATATAGGGACAGAAACA
GTTTGGAGGCCTTGTGTAAAACCTGAACCAGAGCAGCCTGCTGCAGCAGCTCAACAAGAG
CAGTCTGCTGCAGCAGCGCAAAAAGAACAGCCTGTTGCACCATCTCAACCAAAAACTTCT
GCTGCAGCACCACAAAAAGAACAGCCCGCTGCACCACTTCAACAAGAATAG

Peptide Sequence

PEP ID

XP_016456934.1
PEP Infomation

PREDICTED: cysteine--tRNA ligase 2, cytoplasmic-like [Nicotiana tabacum]
Sequence

MVNEKIEFQVYNTMTKQKEVFIPKEPGKVKLYVCGVTSYDFSHIGHARAYVAFDVLYRYL
KYLGYDVVYVRNFTDVDDKIIKRANETGEDPIALSGRFCQEFLKDMDDLQCLLPTHQPRV
TDHMEQIKEMIAKIITNGCAYTIDGDVYFSVDSFPEYGRLSGRKLEDNRAGERVAVDSRK
RNAADFALWKAAKPGEPSWESPWGPGRPGWHIECSAMSAQYLTHSFDIHGGGMDLTFPHH
ENEIAQSCAACRESNISYWMHNGFVTIDDEKMSKSLGNFFTIREVTRLYHPIALRYFLLG
MHYRSPVNYSISQIEIASESVFYLYQTLHDCEEALSVFQQGTETETEVRGVRVSPQAQEC
IKKLRNELETKLSDDLHTPTILNAALQEALRLMNSSLNMLKKKQQKKQQLSAVLSLAELL
KEVKAVLDVLGLLSSSTCAEVLQQFKERALKRAELTEEDILHAIEERTLARKNKEFARSD
QIRSDLVAKGIALMDIGTETVWRPCVKPEPEQPAAAAQQEQSAAAAQKEQPVAPSQPKTS
AAAPQKEQPAAPLQQE

Transcript Sequence

Gene sequence data has not been registered.